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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AT1A1_CATCO
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVGDGRDQY ELAAMSEQSG KKKSKNKKEK KEKDMDELKK EVDLDDHKLS LEELHHKYGT  60
   61 DLSKGLSNSR AEEILARDGP NALTPPPTTP EWVKFCKQMF GGFSMLLWTG AVLCFLAYGI 120
  121 LAAMEDEPAN DNLYLGVVLS AVVIITGCFS YYQDAKSSKI MDSFKNLVPQ QALVVRDGEK 180
  181 KQINAEEVVI GDLVEVKGGD RIPADLRIIS SHGCKVDNSS LTGESEPQTR SPDFSNDNPL 240
  241 ETKNIAFFST NCVEGTARGI VISTGDRTVM GRIATLASGL EVGRTPISIE IEHFIHIITG 300
  301 VAVFLGVSFL LLSLVLGYSW LEAVIFLIGI IVANVPEGLL ATVTVCLTLT AKRMAKKNCL 360
  361 VKNLEAVETL GSTSTICSDK TGTLTQNRMT VAHMWFDNQI HEADTTENQS GTSFDRSSDT 420
  421 WASLARIAGL CNRAVFLAEQ IDVPILKRDV AGDASESALL KCIELCCGSV KEMREKFTKV 480
  481 AEIPFNSTNK YQLSVHKIPS GGKESQHLLV MKGAPERILD RCATIMIQGK EQLLDDEIKE 540
  541 SFQNAYLELG GLGERVLGFC HFYLPDEQFP EGFQFDADDV NFPTENLCFV GLMSMIDPPR 600
  601 AAVPDAVGKC RSAGIKVIMV TGDHPITAKA IAKGVGIISE GNETVEDIAA RLNIPVNEVN 660
  661 PRDAKACVVH GGDLKDLSCE QLDDILKYHT EIVFARTSPQ QKLIIVEGCQ RTGAIVAVTG 720
  721 DGVNDSPALK KADIGVAMGI AGSDVSKQAA DMILLDDNFA SIVTGVEEGR LIFDNLKKSI 780
  781 AYTLTSNIPE ITPFLFFIIA NIPLPLGTVT ILCIDLGTDM LPAISLAYEA AESDIMKRQP 840
  841 RNPKTDKLVN ERLISIAYGQ IGMIQALAGF FTYFVILAEN GFLPPRLLGI RMNWDDKYIN 900
  901 DLEDSYGQQW TYEQRKIVEF TCHTAFFTSI VIVQWADLII CKTRRNSVFQ QGMKNKILIF 960
  961 GLFEETALAA FLSYCPGMDV ALRMYPLKPN WWFCAFPYSL LIFIYDEIRK LILRRNPGGW1020
 1021 MERETYY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle