YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM38A_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLISSLSLG ELALSFSRVP LFPVFDLSYF IVSIIYLKYE PGSVELSRRH PVASWLCAML  60
   61 HCFGSYILAD LLLGEPIIDY FSNSSSILLA SGVWYLIFFC PLDLFYKCVC FLPVKLIFVA 120
  121 MKEVVRVRKI AVGIHHAHHY HHGWFIMIAT GWVKGSGVAL LSNLEQLLRG VWKPETNEIL 180
  181 HMSFPTKASL YGAILFTLQQ TRWLPVSKAS LIFVFTMFMV SCKVFLTATH SHSSPFDVLE 240
  241 GYICPVLFGA TWGGDHHHDN HGAPHGMGLG TQHSGLPAKA KEELSEGFRK KKTKKAD

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.66
Transmembrane Helix	19	37	0.81
Cytoplasmic	38	51	0.77
Transmembrane Helix	52	73	0.89
Non-Cytoplasmic	74	91	0.67
Transmembrane Helix	92	119	0.69
Cytoplasmic	120	139	0.78
Transmembrane Helix	140	162	0.75
Non-Cytoplasmic	163	178	0.69
Transmembrane Helix	179	198	0.43
Cytoplasmic	199	208	0.47
Transmembrane Helix	209	229	0.84
Non-Cytoplasmic	230	297	0.54