YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|112813, gi\|75...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTLTRPQPR FIYTEIYSRI YIYIYTSEML KTVTTAMAAG DDDVPASILE IELPAILLNE  60
   61 SLFIELNGNL TQLVDTTSNL SQIVWNRSVN GNGNSNTFDL VDDEQERAAV EFWLLVKMIA 120
  121 MAVVLGLMIL VTIIGNVFVI AAIILERNLQ NVANYLVASL AVADLFVACL VMPLGAVYEI 180
  181 SNGWILGPEL CDIWTSCDVL CCTASILHLV AIAADRYWTV TNIDYNNLRT PRRVFLMIFC 240
  241 VWFAALIVSL APQFGWKDPD YMKRIEEQHC MVSQDVGYQI FATCCTFYVP LLVILFLYWK 300
  301 IYIIARKRIQ RRAQKSFNVT LTETDCDSAV RELKKERSKR RAERKRLEAG ERTPVDGDGM 360
  361 GGQLQRRTRK RMRICFGRNT NTANVVAGSE GAVARSMAAI AVDFASLAIT REETEFSTSN 420
  421 YDNKSHAGTE LTTVSSDADD YRTSNANEII TVSQQVAHAT QHHLIASHLN AITPLAQSIA 480
  481 MGGVGCLTTT TPSEKALSGA GTVAGAVAGG SGSGSGEEGA GTEGKNAGVG LGGVLASIAN 540
  541 PHQKLAKRRQ LLEAKRERKA AQTLAIITGA FVICWLPFFV MALTMSLCKE CEIHTAVASL 600
  601 FLWLGYFNST LNPVIYTIFN PEFRRAFKRI LFGRKAAARA RSAKI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.62
Transmembrane Helix	21	39	0.33
Non-Cytoplasmic	40	118	0.70
Transmembrane Helix	119	144	0.88
Cytoplasmic	145	152	0.65
Transmembrane Helix	153	177	0.86
Non-Cytoplasmic	178	192	0.66
Transmembrane Helix	193	213	0.69
Cytoplasmic	214	233	0.91
Transmembrane Helix	234	254	0.93
Non-Cytoplasmic	255	278	0.94
Transmembrane Helix	279	302	0.92
Cytoplasmic	303	562	0.85
Transmembrane Helix	563	585	0.89
Non-Cytoplasmic	586	598	0.79
Transmembrane Helix	599	619	0.90
Cytoplasmic	620	645	0.94