YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLC4M_SYMSY
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKEPRVQ PLGLLEEDPT TSGIRLFPRD FQFQQTHGHK SSTGCLGHGP LVLQLLSFAL  60
   61 LAGVLVAILV QVYKVPSSLS QEQSEQDVIY QNLTQLKAAV GELSEKSKLQ EIYQELTQLK 120
  121 AAVGELPEKS KQQEIYQELT QLKASVGELP EKSQLQEIYQ ELTRLKAAVG ELPEESRLQE 180
  181 IYQELTRLKA AVGELPEKSR LQEIYQELTR LKAAVGELPE KSRLQEIYQE LTRLKAAVGE 240
  241 LPEKSKLQEI YQELTRLKAA VGELPDQSKQ QQIYQELTDL KTAFERLCCR CPKDWTFFQG 300
  301 NCYFMSNSQR NWHDSVTACQ EVGAQLVVIK SAEEQNFLQL QTSRSNRFSW MGLSDLNQEG 360
  361 TWQWVDGSPL SSSFQRYWNS GEPNNSGDED CAEFSGSGWN DNRCNVDNYW ICKKPIACFR 420
  421 DE

Type	Start	End	Confidence
Cytoplasmic	1	50	0.92
Transmembrane Helix	51	73	0.88
Non-Cytoplasmic	74	422	0.97