YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLC4M_NOMCO
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKEQRVQ PLGLLEEDPT TSGIRLFPRD FQFQQTHGHK SSTGCLGHGP LVLQLLSFTL  60
   61 LAGFLVAILV QVYKGPSSLS QEQSEQDVIY QNLTQLKAAV GELSEKSKLQ EIYQELTQLK 120
  121 AAVGELPEKS RLQEIYQELT RLKAAVGELP ENSRLQEIYQ ELTQLKAAVG ELPEKSKQQE 180
  181 IYQELTRLKA AVGELPEKSK QQEIYQELTR LKAAVGELPE KSKQQEIYQE LTRLKAAVGE 240
  241 LPDQSKQQQI YQELTDLKTA FERLCCRCPK DWTFFQGNCY FISNSQRNWH DSVTACQEVG 300
  301 AQLVVIKSAE EQNFLQLQSS RSNRFTWMGL SDLNQEGTWQ WVDGSPLSSS FQRYWNSGEP 360
  361 NNSGDEDCAE FSGSGWNDNR CNVDNYWICK KPTACFRDE

Type	Start	End	Confidence
Cytoplasmic	1	50	0.90
Transmembrane Helix	51	73	0.86
Non-Cytoplasmic	74	399	0.97