YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLC4M_GORGO
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKEPRVQ QLGLLEEDPT TSGIRLFPRD FQFQQIHGHK SSTGCLGHGA LVLQLLSFTL  60
   61 LAGVLVAILV QVSKVPSSLS QEQSEQDAIY QNLTQLKAAV GELSEKSKLQ EIYQELTQLK 120
  121 AAVGELPEKS KLQEIYQELT QLKAAVGELP EKSKLQEIYQ ELTQLKAAVG ELPEKSKLQE 180
  181 IYQELTRLKA AVGELPEKSK LQEIYQELTQ LKAALGKLPD QSKQQQIYQE LTDLKTAFER 240
  241 LCRHCPKDWT FFQGNCYFMS NSQRNWHNSV TACQEVRAQL VVIKSAEEQN FLQLQTSRSN 300
  301 RFSWMGLSDL NQEGTWQWVD GSPLSPSFQR YWNSGEPNNS GNEDCAEFSG SGWNDNRCDV 360
  361 DNYWICKKPT VCFRDE

Type	Start	End	Confidence
Cytoplasmic	1	49	0.92
Transmembrane Helix	50	70	0.92
Non-Cytoplasmic	71	376	0.98