YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	shk-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRFNRIKSR AAEMASGNSE EGKGMLLRNG DDRIRLPSPQ RGTPDTSSTQ GHPYTDQIVT  60
   61 INVSGMRFQT FESTLSRYPN SLLGDRNKRQ HFFVSDTNEF FFDRHRTTFE SILYIYQSGG 120
  121 RVKRPEIVPI DIFLKEMRFF QMGDDLLEEF WIAEGYEKPK EVMMPNNKTQ RKIWELMEYP 180
  181 DSSLSARIIA FISIAVIALS IISFCWETVP SDIEEKPINN SATAELLDEM DEKHYSPFFW 240
  241 IELMCILWFT IELILRFISC PCKVTFATSV LNIIDFVAIA PFFVNFFFAD TSKSNSSMSF 300
  301 AVLRVLRLVR VFRVFKLSRH SVGLQILGKT FRSSVQEFCL LIFFMAIALV LFASGMYFAE 360
  361 QGEPNSKFTS IPASFWFVLV TMTTVGYGDL VPLSPFGKVV GGMCAMIGVL TLALPVPIIV 420
  421 ANFKHFYRQE NRLASMKSKG DDADDDIA

Type	Start	End	Confidence
Cytoplasmic	1	183	0.96
Transmembrane Helix	184	205	0.89
Non-Cytoplasmic	206	237	0.91
Transmembrane Helix	238	258	0.92
Cytoplasmic	259	267	0.73
Transmembrane Helix	268	289	0.88
Non-Cytoplasmic	290	337	0.70
Transmembrane Helix	338	359	0.92
Cytoplasmic	360	367	0.65
Transmembrane Helix	368	391	0.81
Non-Cytoplasmic	392	398	0.61
Transmembrane Helix	399	423	0.86
Cytoplasmic	424	448	0.69