YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acr-8
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFAFLLRIF VYAGLFFYVN PNRYADQMYE DLLYYYNKNV RPIKNASESV KVKFGSSLIR  60
   61 IIDVDEVNQV LTTNLWLEMQ WFDYRLMWDP GRWGKIRKLH VPVDQIWIPD ILLYNNADGE 120
  121 PHITIMSDAI VYYNGLVVWK PPSIYKSFCS IDIEYFPYDT QTCWMKFGGW TYNGFLLDVR 180
  181 QLPVEEWTLV VTTRKLQVCA HASSISFFFR SLEWDLMELN SARHEKIYAG CCGQDFYIDI 240
  241 TFKIEIRRKT LFYTINLMIP CTMFAILTSI VFYVPPIEHK MTFSISILVT LTVFYLILID 300
  301 LVPPTSLVIP LIGKYLLFTM FLVSISIMLS VISLNFYRRD GSSFPMPHWM KVVFIHTLPR 360
  361 YICIKTAEED DGSDRGSSIS DIGPFMDSRR PSPFFITVNE RQLNGRLSEL KKKGMHPDLI 420
  421 RNMIQNVEFI AEYFNSLKKE DKVSEDWSYV ANVIDRIFLI IFSIMNVVGT WVILLNSPAL 480
  481 FDNRTPLFIN SVARPLSGDT FEHFINENFT QLAWWASTIK NSTTDVSDSD LCPIKYQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	250	0.53
Transmembrane Helix	251	274	0.91
Cytoplasmic	275	280	0.50
Transmembrane Helix	281	303	0.85
Non-Cytoplasmic	304	314	0.45
Transmembrane Helix	315	337	0.91
Cytoplasmic	338	456	0.58
Transmembrane Helix	457	475	0.86
Non-Cytoplasmic	476	537	0.62