YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE36458
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHQASHFGV KKKWKANGSS GGGGLSAFAR MKPVLDPSAD RIWTIGQIIY QRHQAFNRNS  60
   61 AIKSQDNGSF DYIDMVSQSS LDRSTEEERR TVQTDDVAEI GMQRPDYQMY CGEEEISEQF 120
  121 VKLNVGGQRF MLRKDTIRRR GVGRLLDLIN KPVADSNADA FFSSTSEFYF ERPPSLFHIV 180
  181 YQFYLNGVIH QPSNLCPVDI IEELEYWRII PDQYLASCCC AQQIDDDDEE VEEQDKPNLF 240
  241 KTLRFGEIRR CVWNIIEEPA SSGKAQAFAV CSVVFVLISI SGLVLGSLPE LQVATKQRNN 300
  301 LTGEEFTEME PMPILGYIEY VCIVWFTMEY GLKMLVSAER SKTFRQLLNI IDLLAILPFI 360
  361 IEMLLLIFGI STEQLRDLKG AFLVIRILRV LRVIRVLKLG RYSSGLQMFG KTLKASFRQL 420
  421 GMMAMVVMTG VIFFSTLVYF LEKDEPASKF HSIPAACWWC IVTMTTVGYG DLTPVTVPGK 480
  481 LVATGAIAGG NRYRTSQYPK ATKSEQMILK VT

Type	Start	End	Confidence
Cytoplasmic	1	264	0.82
Transmembrane Helix	265	288	0.83
Non-Cytoplasmic	289	313	0.78
Transmembrane Helix	314	332	0.76
Cytoplasmic	333	347	0.81
Transmembrane Helix	348	370	0.90
Non-Cytoplasmic	371	416	0.57
Transmembrane Helix	417	441	0.87
Cytoplasmic	442	449	0.49
Transmembrane Helix	450	470	0.66
Non-Cytoplasmic	471	512	0.43