YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE36457
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSAIMQGAA MATSHGIARL NRHNAQRNHF HIPTANRLFY QLQTPCTSTE EERRTVQTDD  60
   61 VAEIGMQRPD YQMYCGEEEI SEQFVKLNVG GQRFMLRKDT IRRRGVGRLL DLINKPVADS 120
  121 NADAFFSSTS EFYFERPPSL FHIVYQFYLN GVIHQPSNLC PVDIIEELEY WRIIPDQYLA 180
  181 SCCCAQQIDD DDEEVEEQDK PNLFKTLRFG EIRRCVWNII EEPASSGKAQ AFAVCSVVFV 240
  241 LISISGLVLG SLPELQVATK QRNNLTGEEF TEMEPMPILG YIEYVCIVWF TMEYGLKMLV 300
  301 SAERSKTFRQ LLNIIDLLAI LPFIIEMLLL IFGISTEQLR DLKGAFLVIR ILRVLRVIRV 360
  361 LKLGRYSSGL QMFGKTLKAS FRQLGMMAMV VMTGVIFFST LVYFLEKDEP ASKFHSIPAA 420
  421 CWWCIVTMTT VGYGDLTPVT VPGKLVATGA IACGVLVLAL PITIIVDNFM KVAETERPAG 480
  481 GNRYRTSQYP KATKSEQMIL KVT

Type	Start	End	Confidence
Cytoplasmic	1	230	0.84
Transmembrane Helix	231	252	0.87
Non-Cytoplasmic	253	277	0.80
Transmembrane Helix	278	296	0.78
Cytoplasmic	297	311	0.81
Transmembrane Helix	312	334	0.90
Non-Cytoplasmic	335	383	0.77
Transmembrane Helix	384	405	0.93
Cytoplasmic	406	413	0.75
Transmembrane Helix	414	434	0.85
Non-Cytoplasmic	435	444	0.64
Transmembrane Helix	445	466	0.92
Cytoplasmic	467	503	0.82