YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-35
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.63
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLVSKRME FGKIVLLVLV IMEMVQICSG VRAALRLRKK SNSADDSEDE EMQDEIDNAI  60
   61 YDKASIFEQG ETHDFLQFLR SIKYDHRQVP DDGYDGPVHV NVSIVVSNIR SVSEVTMDYS 120
  121 IEMFYRESWR DPRLTYSRDK FKNKTEISLH ESYSNYLWHP DTFVPNAISS KNPRRQSITH 180
  181 RSLLRLRNNG SILYSRRLSL ILTCGMDLTL FPFDTQLCKM GFESYGYTAD KVKYLWSTGA 240
  241 IQSLKLHKIR LPDFQVKEAY VTSRVESYAT GDYSRLYVCF VFNRAAGFCF LQLIIPSTAV 300
  301 VITSWVSLWM ENETSFQDMI SIILTITFLL FSYNEVMPRV SYIKAMDVYL GVCFCIVFLS 360
  361 LIKLAAVKYM RQRLLITRDT SIVAAGMLPM LRLVNGIGSP AVNGSEGFTY ENPAVKKVSM 420
  421 SPDTFTQVQM ETNGSMSPVC RQNRAKDNGN VSQSSNCFEF SPTFMHRFHW ITQMTFFFGF 480
  481 VIFCLFYFLV YPNIHTQITD DDCDRQMAEW FAEIH

Type	Start	End	Confidence
Signal Peptide	1	33	0.61
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	284	0.82
Transmembrane Helix	285	309	0.84
Cytoplasmic	310	315	0.78
Transmembrane Helix	316	337	0.81
Non-Cytoplasmic	338	344	0.81
Transmembrane Helix	345	367	0.89
Cytoplasmic	368	379	0.76
Transmembrane Helix	380	396	0.57
Non-Cytoplasmic	397	468	0.59
Transmembrane Helix	469	491	0.90
Cytoplasmic	492	515	0.60