YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	unc-50
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQPRGSGT QPGPSQSPIS QRNFRYEPAR SGYTSPGQYS TYSTSTADRV GCLTAVRMSA  60
   61 FAKLSRFTRR LVHIRQMDFE FALWQMLYLL IQPSKVYKNF IYRKRTKDQF ARDDPAFLVL 120
  121 LALSLLFSSI FYAYALGLEK IGFFTFFLWS VFVDCIGVGV VIATVLWWVS NRFLRKVRDQ 180
  181 DVEWGYCFDV HLNAFFPMLI LLHVIVPILY PTLIDSPAFL SILLGNTFWF LAACYYVYIT 240
  241 FLGYTALPIL HKTQYFLYPI SFIFMFFVAT LTGGWNISRT ALNFYHSRAE PHKFAPQHGG 300
  301 L

Type	Start	End	Confidence
Cytoplasmic	1	114	0.92
Transmembrane Helix	115	136	0.93
Non-Cytoplasmic	137	145	0.82
Transmembrane Helix	146	169	0.93
Cytoplasmic	170	189	0.86
Transmembrane Helix	190	210	0.89
Non-Cytoplasmic	211	221	0.71
Transmembrane Helix	222	247	0.78
Cytoplasmic	248	254	0.86
Transmembrane Helix	255	277	0.91
Non-Cytoplasmic	278	301	0.94