YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37041
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.88
Transmembrane Helix	69	91	0.88
Non-Cytoplasmic	92	108	0.63
Transmembrane Helix	109	132	0.83
Cytoplasmic	133	148	0.76
Transmembrane Helix	149	172	0.90
Non-Cytoplasmic	173	190	0.81
Transmembrane Helix	191	210	0.95
Cytoplasmic	211	217	0.64
Transmembrane Helix	218	238	0.91
Non-Cytoplasmic	239	306	0.84
Transmembrane Helix	307	328	0.91
Cytoplasmic	329	341	0.76
Transmembrane Helix	342	363	0.88
Non-Cytoplasmic	364	383	0.73
Transmembrane Helix	384	404	0.93
Cytoplasmic	405	432	0.81
Transmembrane Helix	433	454	0.86
Non-Cytoplasmic	455	460	0.63
Transmembrane Helix	461	482	0.84
Cytoplasmic	483	499	0.54
Transmembrane Helix	500	534	0.77
Non-Cytoplasmic	535	939	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTDAPPFG PSTSSMDMRV PIPDGPFIDN PNFVHENNEE SQSTPRGSTS GDGGGGSPSM  60
   61 EFSSSRPGGL STISGVFAPV ALSMFSILLF LRMGFVVGQL GFLMTILQLA MAYAIVMLTV 120
  121 LSLCAISSNG AVEGGGVYYM ISRSLGPEFG GAIGVLFFVA NVFSCALYIS GFTEALMNNI 180
  181 GNGQFPDSPA WRFVYCVLVS LVLLVLSLLG SALFAKTALI TFVLISVCYG TWIVSVIFNG 240
  241 RMEVLIPKVN TPAYRVLVNA SDPSQGTVED FNQTLTANYT GWSFHTLGEN MFPEYTMDYT 300
  301 TEKPTDFALM FAIIFSGVTG LMAGANMSGE LARPSVSIPR GTVQAVFMTL FVYVMTAFLM 360
  361 ATTSSRYLLQ NDYTVMMDTN FHRVFILIGI FSTTLFSSMS NLIGSSRVLN RLSHDKLFGC 420
  421 LLRPAKIEIG DRNPVVSVVI TWMCVVLVFL VGAMNKIAKL TSIFFLLSYM GVNVATLALE 480
  481 LTSAPNFRPT FKYFSWQTCA LGVVATATMM LVVDASMSAL GVVVLMSLIM VLHYQAPSVS 540
  541 SGSISQALIY HQVRKYLLLL DVRKEHVKYW RPQILLLVSR PASACSLLDF VNDLKKSGLY 600
  601 LVGHVRKGEM DSSQVVDPLQ QVFPYWLSLI DYLKLKAFVE LTMSNNIRHG IQQLMRLSGL 660
  661 GAMKPNTVVI GFHELAPSQV TLQESQLLKD LRFSKIDRAA VVEYFTAGDY MPKELDGNLE 720
  721 RLTPVDYVNV LKDVLHMTKN LCVARHFSKL DKEALARGWN GQKRYIDVWP VDLQKPQETG 780
  781 LGWDNSSLFL LQLSCILSMS SRWRSYTKLR VFICVNSLQD MHRRERQLKN MLQTLRIEGE 840
  841 SSVVPWDHVV CHYQPPNATA SANTATPSVD LPPAYVSAFN DMVKRYSEDA AITLLNLPVP 900
  901 PDNADIDADR YLEMVRNLTD ALPPTLLVHG VSSVISTAL