YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-36
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVTSEKDGL KSILSQKYTV ERKDTVQHVL EGPGLSRNQS NASVLTLPGS RNTSSNHLPA  60
   61 QRSTSVDEVA RHRVTYEMDA GKSEKSENQN PISQYYQKNH YTVTGNQETY QKLPRNISAN 120
  121 RFQVDKASIS QKSAPRASEP MEMPMLPQER QFDKSFYWFA MHRKKFGLRY IALLVLALIY 180
  181 TLLGATVFYL IEGSNEKSRL HVREQNLDKL LDELATVLSE AVNDPEQSSE HQRMKEFIKE 240
  241 SYISLQKHEE QYKWSTYYRL EHPDNLKWTF SSAFFFSMNV YTTTGYGSIS AQTFSGQLFT 300
  301 MIYAFCFVPV TLVILRDLGQ MFLVNFTKLY AHGLTAVRRI RGKREVDEDE IIQLPIKFCM 360
  361 TILIAYLLLC TTFVYLYDAV MGPEWDDGLP YFTAFYFSFI SLTTIGLGDV MPNNVPYAPP 420
  421 VSMIFFIGMA VTKVVNRATF IAVENGVFGL MTLAETKISM LLTERKPGVK TVRSTSSGSS 480
  481 AESVDSKEPR GFDGDSDSGS DDGVINRRRN EMMNTFTVRS IATFMRSNHD VYGGGFGRVQ 540
  541 LRRGDLMSSN ALHTVPWVRP LP

Type	Start	End	Confidence
Cytoplasmic	1	165	0.88
Transmembrane Helix	166	191	0.85
Non-Cytoplasmic	192	267	0.87
Transmembrane Helix	268	289	0.54
Cytoplasmic	290	293	0.44
Transmembrane Helix	294	316	0.82
Non-Cytoplasmic	317	357	0.39
Transmembrane Helix	358	380	0.85
Cytoplasmic	381	387	0.39
Transmembrane Helix	388	408	0.81
Non-Cytoplasmic	409	414	0.41
Transmembrane Helix	415	435	0.65
Cytoplasmic	436	562	0.72