YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acr-20
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKSPIEVH FSMELYQIIS VNEPQQFLML NAWVVERWTD RLLGWDPEKF GNVTEIMLPH  60
   61 HFIWLPDTTL YNSLVMKDDE NRRLLHAKVT TLGEGNGAFI ELLYPTIYKL SCLLNLRFFP 120
  121 FDVQSCRLLF GSWTFDNTKI DYFAFNESQA IGTTNCIENE GWNVLSTSVI RHENKYDCCP 180
  181 NNYTLLEFRL TIQRKPLYYI INLIIPTSII TFISIIGFFS TSSINEPREE KITLGITTLL 240
  241 SMSILIFMVS DKMPSTSSFI PLIGLFYTSM ILLISFSTIC SSVVIYVQKQ GNLGNPPSKN 300
  301 FMNIARAVNR FIRMEMPLIM KQAYAQKARE EKLRRQQMGR KQSLWTRVYK LAREQALRKD 360
  361 VQTSQNSSKF NEVLTPEKLI DNGGKRCTIN KDVTCISDSG IVAMGVPTLA SEDDDQDVSL 420
  421 LELETTPTPA MQRPTRLHKA STCGSFDSMM FRQIEVPVSP RTARNLAEIE YDWLAALLER 480
  481 IFLITFLFIF VLTSIGINLI GFFYWWMAPD TVRV

Type	Start	End	Confidence
Non-Cytoplasmic	1	197	0.85
Transmembrane Helix	198	220	0.94
Cytoplasmic	221	231	0.76
Transmembrane Helix	232	250	0.92
Non-Cytoplasmic	251	262	0.71
Transmembrane Helix	263	287	0.85
Cytoplasmic	288	481	0.91
Transmembrane Helix	482	506	0.89
Non-Cytoplasmic	507	514	0.86