YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE36883
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKTEATFSL LDEEEERDEV GPSTVLVPGR PSLRSISLSQ APSAPRDLEN GNGQTSCAEL  60
   61 HKLTAGSTTS LSSQSKNAKK VNKFYKKQNE LLENFKNDSE QIEQFNRTRR RTTSKEEDDD 120
  121 ADVIAAIPPP IPEEKAVVAP LVKHIKPMER TDTEEKSVDE KKDDESNTAA RMANITLAVN 180
  181 FLLMIAKVVA SVLSGSMSII SSMVDSVVDI TSGLVISLSE RMIKKRDPYL YPRGRTRLEP 240
  241 LSLILISVIM GMASIQLIIA SVRGIHDGIQ FHLYGIGEEP KLNVTITSVV IMVSTVLVKL 300
  301 SLYLFCKRYK EPSVNVLAMD HRNDCISNTV ALICAWLGTK YSYYFDPAGA IVVSMYILYT 360
  361 WVQTGREHLA KLSGKTAEPE FINRIIKVCL DHDARISHID TVYVYHFGSK FLVEVHIVLD 420
  421 ENMILKESHD ISETLQSNIE SLPEVERAFV HTDYDYDHHP HDEHKIV

Type	Start	End	Confidence
Cytoplasmic	1	171	0.94
Transmembrane Helix	172	193	0.76
Non-Cytoplasmic	194	198	0.55
Transmembrane Helix	199	219	0.79
Cytoplasmic	220	240	0.86
Transmembrane Helix	241	262	0.93
Non-Cytoplasmic	263	283	0.86
Transmembrane Helix	284	303	0.89
Cytoplasmic	304	467	0.70