YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nas-11
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPSLVFLIV VIVVVEGQGW RPWDRFNHPG NFGNWGGNNW GTRQRNQEPH DIPPPVPPPG  60
   61 FRGNNDRFGG NIIKVVEIID LGKSKNRGDI LSDFKDVHKK HRHLGRKEWK GKVKQFCHRF 120
  121 PGHPNCRRGK VPDQKELEEM IGQFSKGGIG RFLKRVPKIY IEDPLARVDP KLKGFLENAG 180
  181 RGFGHVSSEH VNKLRDICKR RKCREQPESA KKTRELFTQK LADFETKIAG KDKTDSVQLR 240
  241 FDRTLQIKEA LLEKGNLTAD IVPVDNGVYD LDTMLTEEQA NILLNELNKA GVGDDEIPLP 300
  301 DADTDDEDDD DSTNSASGAA PGSSRLKKSA LYFEGNLIKK WDPSSPIRYV LDSSLEDLDK 360
  361 NDVRAAIYEI EKNTCIRFKE LSSPPTGSHI VYYKVDSPTL TKELQFMKQC MRSELPISTF 420
  421 AMIVINLLLL IGVTLIHNNT MHLLWWIQNC TLHTE

Type	Start	End	Confidence
Signal Peptide	1	17	0.98
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	416	0.99
Transmembrane Helix	417	437	0.91
Cytoplasmic	438	455	0.89