YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	catp-5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.89
Transmembrane Helix	40	60	0.87
Cytoplasmic	61	172	0.98
Transmembrane Helix	173	195	0.82
Non-Cytoplasmic	196	213	0.87
Transmembrane Helix	214	236	0.92
Cytoplasmic	237	385	0.98
Transmembrane Helix	386	406	0.94
Non-Cytoplasmic	407	424	0.85
Transmembrane Helix	425	445	0.71
Cytoplasmic	446	907	0.63
Transmembrane Helix	908	922	0.47
Non-Cytoplasmic	923	938	0.71
Transmembrane Helix	939	957	0.89
Cytoplasmic	958	975	0.89
Transmembrane Helix	976	998	0.89
Non-Cytoplasmic	999	1016	0.93
Transmembrane Helix	1017	1038	0.94
Cytoplasmic	1039	1047	0.95
Transmembrane Helix	1048	1071	0.90
Non-Cytoplasmic	1072	1089	0.84
Transmembrane Helix	1090	1112	0.86
Cytoplasmic	1113	1174	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKREKDNPKA KTTSFNQGKL NIGEETCDLY AYKETIGRQI LFWLLTIVTL GFYQLLAYWV  60
   61 KSLFVKVRFQ PTSHDECEYV MVEDIHGTQT IKEVFKAESD VGLARPTRSG KQEKVKVMRF 120
  121 FTYRKIKYIW YEKDQEWLNP ADMDSAAPFN IYQKLTLDVI GLKEQDVIAS RKIYNMNALA 180
  181 LALTPILVIL FKEVLGPFYL FQCFSVALWY SDNYAYYASV IVIITVGSAA VAVYQMRAQE 240
  241 KRIRNMVGDT ISVIVRRDGH DITIDASEIV PMDILILPSN TFILPCDCLL MNGTVIVNEA 300
  301 MLTGESVPVT KASLKEADEC GPEIRLSSEH NRHTLFSGTT VLQTRNYKGQ PVMARVIRTG 360
  361 FSTLKGQLVR SIMYPKPQEK EALKDVMVFI LVLGFIALIG FIYTVIEMVS RGESLKHIII 420
  421 RSLDIITIVV PPALPAAMSV GIINANSRLK KKKIFCTSPT TVNVCGLINV ACFDKTGTLT 480
  481 EDGLDFNCLK AIRKNEDGKP EFTSEFEELD PVKLSAENAN LNIVVAAASC HSLTRIDGTL 540
  541 HGDPLELILV EKSKWIIEEA VNSDEETQDF DTVQPTVLRP PPEQATYHPE NNEYSVIKQH 600
  601 PFNSALQRMS VIISTPSEHS AHDMMVFTKG SPEMIASLCI PDTIPEDYME VVDEYAQRGF 660
  661 RLIAVASKAV HLNFAKALKT PRDIMESELE FLGLIVMENR LKDVTLSVIN ELSVANIRCV 720
  721 MVTGDNLLTA MSVARECGII RPTKKAFLIT HSKTEKDPLG RTKLFIKESV SSSENDIDTD 780
  781 SEVRAFDRKA VLRTATYQMA IAGPTYSVIT HEYPELVDRI TAMCDVYARM APDQKAQLIG 840
  841 ALQEIGAKVS MCGDGANDCA ALKAAHAGIS LSQAEASIAA PFTSNVPDIR CVPTVIKEGR 900
  901 CALVTSYAVS KYMAAYSLNE FLSVMLLYND GTNISDGQFL YIDLVLITLV ALFLGNTEAS 960
  961 RKLSGIPPPR RLATSAFYFS VFGQMFFNII TQTTGYLLVR GQSWYVPNPE ELDNTTTMIG1020
 1021 TTVFFTSCCM YLGYAFVYSK GHPYRRSVFT NWLLCGIIFV IGAINMVMIF TNMGFLMNLM1080
 1081 GFVYVPSTSM RFILLAISLA GVFLSLLYEH FFVEKVVAIH FESYLRQRRL RNGDPSLSAY1140
 1141 EKILAAIGSS PRWFEDEINL SKSIDRKETI ESKC