YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37029
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	129	0.64
Transmembrane Helix	130	149	0.70
Non-Cytoplasmic	150	156	0.33
Transmembrane Helix	157	178	0.84
Cytoplasmic	179	213	0.52
Transmembrane Helix	214	236	0.86
Non-Cytoplasmic	237	242	0.77
Transmembrane Helix	243	261	0.92
Cytoplasmic	262	339	0.96
Transmembrane Helix	340	358	0.95
Non-Cytoplasmic	359	375	0.85
Transmembrane Helix	376	398	0.87
Cytoplasmic	399	405	0.85
Transmembrane Helix	406	427	0.90
Non-Cytoplasmic	428	432	0.63
Transmembrane Helix	433	454	0.73
Cytoplasmic	455	464	0.62
Transmembrane Helix	465	487	0.75
Non-Cytoplasmic	488	491	0.69
Transmembrane Helix	492	514	0.90
Cytoplasmic	515	627	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNLNVVYMM YDPEFQCMVP GFNDTNDTTI SSHGPYLWGV DDIKNISFVF PNANSDGAYQ  60
   61 RDSCYFYERS EERYRQLRRM PLETAMSEAW KDVAPKKKCQ AYHFEKDVMV ETIVTDFNLV 120
  121 CDSWFAKGHA HMFYSIGYLL GCVLGGIASD KIGRKPTIIG FGILSSMLGV FLPFNDYYPM 180
  181 FLLIRLLSAI CNEAADLAAY TLCMEITGTK YRAMVGSMLQ APWALGYALL ALIAYLTKSW 240
  241 KTIQVIAAGL HFMSIIFICS IPESPRWLMV QNRVSEAEEV IRKACREPPF PFNMCTTSKC 300
  301 GNLPSDLELV SHRERKLNKK NGGKIGFLDL FTMKELRYRT ISVCIVFMAT ALVYYGLVMA 360
  361 LSDQSAPGRT LFTGYFHLNN GIAGAIEIPT LFACVWMMQL GRKKALMLTL ITSGLFIIVA 420
  421 MLSMVSGHYM LALAFMYFGK IAVQGAFNIL YIFTSELYPT VVRNTAVGVT SMVARFGSGL 480
  481 SSYIALLSNI SLPIVPMIIF AVFSLFAGML VFVLPETSEK PLPETLDDAI NFLEPTKQVN 540
  541 CMMGRFGVFG HQKMTKSISL TENPSTNDIA DLKPLSRRSS AITRRMTERA SVIYSRNASR 600
  601 TNSIVQDIQD IQIPSDFKMP DLVSTDE