YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE36936
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	55	0.92
Transmembrane Helix	56	78	0.87
Non-Cytoplasmic	79	97	0.83
Transmembrane Helix	98	115	0.88
Cytoplasmic	116	136	0.77
Transmembrane Helix	137	154	0.74
Non-Cytoplasmic	155	160	0.63
Transmembrane Helix	161	182	0.78
Cytoplasmic	183	191	0.82
Transmembrane Helix	192	213	0.86
Non-Cytoplasmic	214	229	0.77
Transmembrane Helix	230	252	0.86
Cytoplasmic	253	263	0.93
Transmembrane Helix	264	286	0.88
Non-Cytoplasmic	287	296	0.86
Transmembrane Helix	297	317	0.92
Cytoplasmic	318	323	0.90
Transmembrane Helix	324	343	0.90
Non-Cytoplasmic	344	350	0.78
Transmembrane Helix	351	370	0.80
Cytoplasmic	371	393	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYVKQEKHP LEYEYLQPEH LKGFDSYKYN CVDNSPLSVY VSHPFWNWLV VFYPRTWVPN  60
   61 VLTLVGWGFV MAGFFIEAYL DYSIDRNSDG STNPIPDWFW FAAAACTFLG HTLDGTDGKQ 120
  121 SRRIGASGPT GELFDHGLDS WSTVPFTITI FSIFGRGRFS ISSVELLCVL ISTQIVFFTT 180
  181 HWEKYNTGIM FLSWAYDVSQ FGLVIVYLWT YIVGYQWFHF DVLGGIVNFA FTFEIGFYMC 240
  241 CLMSLIASAY NVHKAEKLKQ PTILAGIRPA WPVVILFGSS IYWAVHSPTN VIDADPRFFF 300
  301 FCMGTVFSNI TCRLIIAQMA STVCDIYNLT LGIYLSTIAL SFYNPSNELP ILRVSTLVIT 360
  361 ALHLHYGICV VRQLCRHFKI YAFDVSYLQN RSK