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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: aman-3
Protein type: Transmembrane
Type Confidence: 0.78
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNRLAFTAK NSKAIIQKMH RLALSAKRKV LLNPKTVSIY FFAILFTFLL AYHQRLGQHN  60
   61 NELHISRVVN MRSFVKEANN LSNSQKNPNI FEPKNEVCQR PLTESSTNFN TFDLFESVVA 120
  121 KGNTLPPASK KSRTEKLKVY VLPFTHVDPG WLETFERYTK STNQILDNMH QFMMKNEKMR 180
  181 FMWAEFVFFE RWWSLQNEQV KEDVKKLVTE GRLELATGSW VMTDEANPYF PVSVDNIVEG 240
  241 FQFIHKNFGI KPQTMWSNDP FGYSNSVPYL FKKSGVHRTV INRIHHKLKQ TLQSQKAIPF 300
  301 KWRQYFDATG EDDVLTQILP YTHYDILNSC GSDASVCCEF DFKRMTHWSC PGPKPEKITN 360
  361 ANVAAKAEKL VNQLEKMSEM YKAPVILMMH GDDFRFDMIE EWNQQHDNFI PVFDEINKGS 420
  421 RVEIRFGTFT DYFNDLEKWY SNNKDSEPPT VSGDFFPYMC ALGDYWTGYY TTRPFFKRQG 480
  481 RLLHSLIRNG DIMLSMLRVN LKQRKIGENV KRLEAARRNL ALFQHHDAIT GTSKVSVMDN 540
  541 YSELLHASIV STNIVLENLT KSDIDLYPRI HDGIELQTIV DLESSEKEIR IFNSHLFEIT 600
  601 DVFKIRVKER EVIVSIDGKI IEAQLEPFFQ KSKVEKDSFL LLFQATVLPL SMMKVKVQRG 660
  661 DSGGLTKMAK IEAKDTNAWD LGSSWTIASS TSAPNLETPY FKVSNDPITG AIQSVNKLSD 720
  721 NSKFHCQQSF YNYKEAGGGA YLMRLHTNPK EIIEYQWLKV SGPLRQSIYQ KSTNVLQRLS 780
  781 IHNVEGPSGE EVDISMSIDI TKERNTELMT RFSTKWDKPL TYTDSVGMQL LRRDFYKLPV 840
  841 QSNYYPMPTA AVLQSGKQRL SIVSNVEHGA RFLESGTVEI NIDRILNQDD GKGLGTGPDA 900
  901 IPIDMKPVDM KFKLIFDSLE SDPTENSRYS THSFRAQQAV QTIIYPPMMF NRPPKKEEDI 960
  961 EEIEEISNLK FPCDIQLLTV RPLEDNKQLL ILYRHATVCS SQKVGNCGGE LKSSLMDLLI1020
 1021 KLGAKQVQKT DLSGVTRVGG IIKVEYLPDY ELKTFDFLTL ILYR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle