YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37015
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	83	0.94
Transmembrane Helix	84	103	0.90
Non-Cytoplasmic	104	146	0.91
Transmembrane Helix	147	168	0.86
Cytoplasmic	169	175	0.93
Transmembrane Helix	176	199	0.91
Non-Cytoplasmic	200	206	0.73
Transmembrane Helix	207	226	0.92
Cytoplasmic	227	232	0.86
Transmembrane Helix	233	256	0.89
Non-Cytoplasmic	257	260	0.86
Transmembrane Helix	261	280	0.95
Cytoplasmic	281	348	0.99
Transmembrane Helix	349	367	0.95
Non-Cytoplasmic	368	376	0.79
Transmembrane Helix	377	399	0.92
Cytoplasmic	400	405	0.92
Transmembrane Helix	406	426	0.93
Non-Cytoplasmic	427	432	0.84
Transmembrane Helix	433	455	0.84
Cytoplasmic	456	466	0.77
Transmembrane Helix	467	490	0.84
Non-Cytoplasmic	491	496	0.71
Transmembrane Helix	497	518	0.92
Cytoplasmic	519	538	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIDESLEDE DIPQTAQTTI TSYCSSDVIN SLNEAMNPLI EQGLKDIGTK QEAHYVEEVD  60
   61 VRNDKIKLES IFEGLGSFGR FQQIQFILIC IPIAFVSMHV MSWTFVVSPA RKICNETNET 120
  121 RIDGCEELAY SASDRWEMDG DNGWIRATVQ AVYFIGQMIG SFTCGVMADK IGRKKVLFWC 180
  181 LVLQVVCALL LIVAPTWWIY AILKAGTGFT QPGIYGVAVV LGIELVGKKY RSFIAVIANV 240
  241 FGVIGGVLLA VMAYFIVDYR LLHASIAIPS LIFITYYWMI HESARWLVSQ EKYDDANVVL 300
  301 CATANWNKKT IPKNWAEKIE KKMDVTATKK KDSFGVFDLI RTPQMRKRTI ANFVMWPVTT 360
  361 MMYYGLTMRS DVGGGSLFVT FVTSQLMELP AVIIVALLID RLGRRIMYSG AIFTAGMLLL 420
  421 ASWLTHDLIP SQYAVIMLMV AKGAVSVAYT VMYTYTSELF PTVIRNTAVG CCSTIARFGA 480
  481 ISASFIAFFL VDRFGRIVMI IPFTILALCA SIVSWTMLPE TVNQQLPDSI SEVEGNKI