YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE36380
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.81
Transmembrane Helix	5	24	0.76
Non-Cytoplasmic	25	70	0.93
Transmembrane Helix	71	91	0.92
Cytoplasmic	92	99	0.93
Transmembrane Helix	100	120	0.94
Non-Cytoplasmic	121	133	0.78
Transmembrane Helix	134	158	0.89
Cytoplasmic	159	166	0.84
Transmembrane Helix	167	190	0.88
Non-Cytoplasmic	191	197	0.81
Transmembrane Helix	198	217	0.96
Cytoplasmic	218	278	0.96
Transmembrane Helix	279	300	0.87
Non-Cytoplasmic	301	311	0.78
Transmembrane Helix	312	332	0.82
Cytoplasmic	333	344	0.76
Transmembrane Helix	345	365	0.88
Non-Cytoplasmic	366	378	0.72
Transmembrane Helix	379	401	0.86
Cytoplasmic	402	414	0.79
Transmembrane Helix	415	438	0.92
Non-Cytoplasmic	439	441	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVKIFVAFT IVSISSMFPN NAFMNAHEYF YYKLRNVTND EDPVNTTDTW FIKRQIRDDV  60
   61 PTELQANFEA YLTVYGSIAC VLGSILNVFA TKSLSNSTRM IWGHILVVVV FIPTIALTFW 120
  121 NFDDDQTFFF NLSMILISIA CFGSLGLMAG GVLGLSALFP SQYTQAVMVG QSFAGVLAAL 180
  181 MSILCQAVTS DVILNGQMYF GFSLIMCFIS LATYYYLTTL TPPMITDDGS EGLIENEEEV 240
  241 SIEAQANHFP PIDSDNSGQT EEHQLPKWTM YTDIIRKSAI DLTTISVVLI VTLAAYPGLT 300
  301 SLVHSTSRNH TWNSYFSAVA SFLLYNVGDL IGRSSANSLR LSPKYLLIIS FLRFALIPMI 360
  361 AMCNVRPRAH THALIPYDGV FVLLVILLST SHGFCITNAT IGATTSIDKD SRELAGSIIA 420
  421 LFGVTAAMFG GVLGVLIIKL V