YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE36840
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQNPTNAQ YSALSLGGPL GSPPSHPGKS IAKITTAFIG ALVVSATILV ALSGTTPSSH  60
   61 LAAPSHEVLA TQDEPIQLEN DSQDKYVEFR YDPISGKYSH VNNDGSRINP FVVKNVERHS 120
  121 EKQYAVYLHK KDSNEEGSIY WKFNLKSTRK ILEKLEIRMV SINNIANGGG KAEACLQPSE 180
  181 TCKDIPVGGV LTLEKPESET LTVGIKLFKN IQLFGRDEKC TECGEFERGF SVKAFWSEVQ 240
  241 LVLLHLQPSE FAIHILFLKL VSINQKIAFE KKMRRRLFGV YMEALVAGQL PFFEFSSNSG 300
  301 FHNPHLKTHY Q

Type	Start	End	Confidence
Cytoplasmic	1	33	0.72
Transmembrane Helix	34	55	0.79
Non-Cytoplasmic	56	311	0.78