YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	set-11
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKISNPNLF CLPYFPHIFL SAETFFSRFL LRVTYQLLRP SQISFLFFFS IFYVFKMYVQ  60
   61 NVKDHITFAV FFWKFFFILA FIFRTGNFGF PIIGKEWFTD VAKQQPMVLY EDISQGCERF 120
  121 VVPVYSNPRF FMDSSLFENF KYTSRIIDVA GQLACRSASP TFMCQCAGQC STNCECSSGV 180
  181 FGEGGTVENM ELLMWDTVRE CNEYCNCALW CGNRVAQKGA MYPVEIFARD PWCGWGVRAS 240
  241 VDIAFGTFIG EYAGELIDDE EAMDRHDSTF LFETKVGSET LTIDAKYSGN YTRFINHSCA 300
  301 PNVKVANISW DYDKIQLIHM CFFTDKAIRK GEELTIDYGE AWWANKKFPC LCKSSECRYQ 360
  361 FGNDQRT

Type	Start	End	Confidence
Cytoplasmic	1	9	0.67
Transmembrane Helix	10	31	0.61
Non-Cytoplasmic	32	36	0.45
Transmembrane Helix	37	59	0.82
Cytoplasmic	60	65	0.47
Transmembrane Helix	66	88	0.82
Non-Cytoplasmic	89	367	0.53