YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acr-18
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.77
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIYPCFLIL WQILSSHRVH ATSHPARTPM RNLYEHLFLD YVKEIRPVRN ESESLKVEIK  60
   61 FWLKQILKVD ERDQIVNIYC WLELYWIDET LTWDPKKFGN LSRIHVPAHK IWKPDVLVYN 120
  121 NANMNVEENE METNAIVDNT GRVMLFRSMI TDISCNLNLQ QFPFDQQICF VTFASWSMDG 180
  181 SKLDLSATPK TDNLELYIRN TEWGLTDFRV KIYQKIYDCC PHPFPDVTYF MVLRRSPSYY 240
  241 IFSLVIPSAF ITVVTIVGFF TPHSTTGENT EKVSLGVTAL LSMAIIMMMV SDEVPATSEV 300
  301 IPLIGKYYIG LIFLIFMAAF TTTLTLSYQM RGNSGQEVDP RVRDFFFYQI AANPCISWAF 360
  361 SFQLPKKLLR SDHRKQSFFF TNGAAHVNGY SKGALHPNTP PAHIVKMEEI TGGGSVKSFV 420
  421 MSQESAATST LLTSSLMKIK VVLDDMKASI HAERELKRIK FEWQQVTRLI DRCIMFSYIL 480
  481 ITIAFAMVML ASRDPPIVLN DLIMDSVKST

Type	Start	End	Confidence
Signal Peptide	1	21	0.77
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	238	0.79
Transmembrane Helix	239	261	0.93
Cytoplasmic	262	272	0.67
Transmembrane Helix	273	291	0.93
Non-Cytoplasmic	292	303	0.66
Transmembrane Helix	304	326	0.88
Cytoplasmic	327	472	0.87
Transmembrane Helix	473	491	0.92
Non-Cytoplasmic	492	510	0.90