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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: nurf-1
Protein type: Transmembrane
Type Confidence: 0.78
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFIPLSIFS ASKIKISYCS LPILDPFLMY FYLIMLYSDC HFSQILLIFL QRPYDDMAPP  60
   61 RGRSKRKHPS ESGNSSIADS EDPSESTSSS RPRRSRLPKR YFDDGYSPPP TKKRAAQRET 120
  121 PSDAEEVEVK IEEISVRSTP ASTPAPKSTS KARGRPKKNP TPPRRKSLKR QEEDIIYMDE 180
  181 DSEEEEESSD DEFMLNEDQV VQEEEEELNL TDIKIEKGLD EENKYCPWLD EDPASLPKLE 240
  241 LPESSQDIPI PTASIMDAVE IYEILRSYHR TLRITPFTFE DFCAALISHN NSCIMAEVHM 300
  301 ALLRNCLKSD DEEQTHYSVT ETNNSVNIMI HHMDTLTYAE ILRQYIEAYP FADASVRDAI 360
  361 NVDNYPFVGY DANIQRDFSF FFNIKHVFRL VVLLFMSYRF LYSSEFKKLV NNVGKFQNDE 420
  421 NCRVCGKSSG RVVGCTQCEA AFHVECSHLK PFPEVLVCNI CKKNSAVRGV LPPDEAVDRE 480
  481 PLRSQPIGRD RYGRYYWFIV RRLVVQSLDE TELYYYSTVP QLYQLLQKLD RTYYEKDLCD 540
  541 TIRLRIDEFL EQMALTVEMT SERREAALET MVKRQLIGYD FAEATTPQIY LHRDSMKRMA 600
  601 SILRDCAQKG QVKQEVKLEE PVEGQSPVKC VQFVEDSILP ESMIGIFDAK LINTFWSGGA 660
  661 TQEELVEQFV DISDNFDAPS ANLWRMGDEG NDQTFMTYYN YYSRNEMSES FLTRKKAADK 720
  721 KKYMASKFAQ IDNFDWVVAK NRQFYGDASL HCKFIMWTLQ QVIKNIPIDL MHRKWPEFAK 780
  781 GFDLEVSVAD DYKKLVTCLL KLDCAVRKTI FMPQWWNGLG QTRLERITVD QRENFMKEQQ 840
  841 RLKKIDADAL TKDLDDSFVR VNYMKPKWPN TYILRQRGET YRNAGKGSMG GWAWVAAKYV 900
  901 EKWIQVPESP KLPLAVTVEE IKTESVSNRK ARRLELLVSK ITKKRQRSGG KSSKKPTFEL 960
  961 TNGCYSPSCR SNPNRKCYSP MCRNGYLVSA KQAHDERKLE ESGVLGEEKA WPIPEIQTFS1020
 1021 TKRGGKSIFV LQKKILRQMI MGGGCQQVYM PGFSAGIKSN LLIWPYPAPR PTLDLCWKWQ1080
 1081 TLNARSLHAV ALQLKIIWSS IKFNEFDPDD THPDRRVVID TPSHDERRRI IRHKEMPPYG1140
 1141 QYERYEMEIE IIPLYDEPEE EDESWLSRNR GGSSEFSHRS SSARKKRPQR SLDNRRATAI1200
 1201 RREWVDGVTL KVFEIKDYWK WIRAEAEKTA KRKLEATRKA QKAKEDEERR RIQQQQQRSV1260
 1261 ARIPVPMHSL IPSERNNVPY LGSQQQRRPN GNERGFLEKY NNSSSVSPQA HGYASTPPPG1320
 1321 YHQPQPNIIR QAGYNQLPRK PTTSPFNFQS RPVATIPTTP QLRAAAGADG VVRAVMMTPG1380
 1381 NKSTVNTNST PYPQALNRQQ YQLQRQQQQP AVRRLTNGYH FMDGTMRGGG RNPSVQMHQR1440
 1441 LPQNRAALQR PFGESTTEMR RVTEAAIPDN DGDEQPPVIP RYDPTSNFDA QRAQQQHPQS1500
 1501 RPVYSTPAQM IRTTQPGGVK HNVILMKASD GTQKMVLKPG QFPPGTVIST GQRVVPYRQP1560
 1561 TAVQQRQLYT ATPGTRVVRI PNANGGAPRQ QDHQVMRRVV QASGPRAMEY MDDQGTPPPG1620
 1621 QQVRYVLQGG NSGTPNVNPP KVSSRGGPRG GLTMQMVQQQ QQHNPEHRRL LAGRQKQKVT1680
 1681 TYRDFMASRG YLDTSKFMMQ TKPTFLPFEF NEEEEREINE AIAREEAWMR QEEENKTSGY1740
 1741 DSSGNPIRSI TSSGDTQRAP PYVSNLLPSS NDSPDDKVIK QVLDVMFSQV CRWDRQYGWS1800
 1801 KTHVKRARQK NDSDKMHLRK FRMNQRELLI TDHMERLKKE INKRRTRMEN EAEQQCGLLT1860
 1861 PWRKARARPH RAAKPKAEVK KEVINPADIT LGGDTYDYVK EQKPTESIAT NVSRRRRTSA1920
 1921 NLSKSEDDRD KPESQSTAPK SKERRTSEPP ASHVAFHTPG SATPHDINLS IEHCTCQKIF1980
 1981 DASKLYIQCE LCARWYHGDC VGVAEQTILG LEHWSCEECI EEQERVKDQP ALYCVCQKPY2040
 2041 DDTKFYVGCD SCQGWFHPEC VGTTRAEAEQ AADYNCPACT REAEGYESEA SDVSGSSRVS2100
 2101 VQLTRADYTH VFELLELLLE HRMSTPFRNP VDLNEFPDYE KFIKKPMDLS TITKKVERTE2160
 2161 YLYLSQFVND VNQMFENAKT YNPKGNAVFK CAETMQEVFD KKLIDVREQM TARQQMLLLA2220
 2221 TAQQQDPMSS IRKRVQSESQ RTVDSLDIDS DQLLPLDANL MRLYDF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle