YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	wht-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGSGAGKTT LMNILAHLDT NGVEYLGDVT VNGKKITKQK MRQMCAYVQQ VDLFCGTLTV  60
   61 REQLTYTAHM RMKNATVQQK MERVENVLRD MNLTDCQNTL IGIPNRMKGI SIGEKKRLAF 120
  121 ACEILTDPKI LFCDEPTSGL DAFMASEVVR ALLDLANKGK TIIVVLHQPS STVFRMFHKV 180
  181 CFMATGKTVY HGAVDRLCPF FDKLGPDFRV PESYNPADFV MSEISISPET EQEDVTRIEY 240
  241 LIHEYQNSDI GTQMLKKTRT AVDEFGGYGD DEDDGESRYN STFGTQFEIL LKRSLRTTFR 300
  301 DPLLLRVRFA QILATAILVG IVNWRVELKG PTIQNLEGVM YNCARDMTFL FYFPSVNVIT 360
  361 SELPVFLREH KSNIYSVEAY FLAKSLAELP QYTILPMIYG TIIYWMAGLV ASVTSFLVFV 420
  421 FVCITLTWVA VSIAYVGACI FGDEGLVVTF MPMFVLPMLV FGGFYVNANS IPVYYQYVSF 480
  481 VSWFKHGFEA LEANQWKEID KISGCDLINP LNATTTGYCP ASDGPGILTR RGIDTPLYAN 540
  541 VLILFMSFFV YRIIGLVALK IRVRFAK

Type	Start	End	Confidence
Cytoplasmic	1	303	0.52
Transmembrane Helix	304	326	0.75
Non-Cytoplasmic	327	347	0.48
Transmembrane Helix	348	367	0.37
Cytoplasmic	368	388	0.65
Transmembrane Helix	389	411	0.68
Non-Cytoplasmic	412	415	0.51
Transmembrane Helix	416	438	0.85
Cytoplasmic	439	445	0.70
Transmembrane Helix	446	466	0.88
Non-Cytoplasmic	467	536	0.90
Transmembrane Helix	537	559	0.86
Cytoplasmic	560	567	0.86