YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srz-56
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTSFFDQL QDIQYAYNFT SFLMLLPIPC FLIVNVLITP FYMFVYKQNI KRDEKMPIFP  60
   61 LMNHFYKMTR TTTVIILFII LGLFMCFFTQ SKNRIFALAS LFPVLLLMES LVILTQVYHW 120
  121 LIFLLAAERA IIYFFPSSEK RVLSILKSIH ANIHYIYIYH LLIILMLKIG FRRGRMFKNA 180
  181 YWYNPELLFW SWHMLGYILL IISALLYLPI MISVRKLSHL ASAQENKPQK YIFWQTMIVV 240
  241 IFQLISLVQS LTLVLINKET EEIDMVLLTF TMMIMDTAYA PLIIQTCYLG CNKRNVKMLV 300
  301 TSRNLKKLVI VVCDSNDSAV HATVCNSYFH YVICISDWPS GKHLKSRKPD LKREFY

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.63
Transmembrane Helix	21	46	0.83
Cytoplasmic	47	65	0.64
Transmembrane Helix	66	89	0.86
Non-Cytoplasmic	90	97	0.52
Transmembrane Helix	98	132	0.68
Cytoplasmic	133	152	0.75
Transmembrane Helix	153	171	0.91
Non-Cytoplasmic	172	189	0.87
Transmembrane Helix	190	211	0.92
Cytoplasmic	212	230	0.88
Transmembrane Helix	231	253	0.91
Non-Cytoplasmic	254	266	0.80
Transmembrane Helix	267	289	0.76
Cytoplasmic	290	356	0.84