YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE36690
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPILFLQFVL ISGTFAQYKD PNTPFSEVID TLPESEKNWM FYFVILLFVL STVTATLLTA  60
   61 SFLIMAVFLW NHLKPMKFFW FLLQLTISAF ILSTLNLVFN VPATLFSVAT EQPYIYIWLV 120
  121 MIYVLPSLTL IFLGQDNCMY RFDNREQKFT LTCFNTVGTN KVKIEIPRII QIIEDTIQIV 180
  181 IPIIILILYI ALVIKIIKMK KTSRNKTEII ILKQAFFIFL MFQIYNIIVL YGKTLKMTTV 240
  241 TAFYLKRAIH TAEIFAGATT PCFVFFTSKE IKKLVSNKIT AGSQGNSVLR NRIASVPRNS 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	40	0.90
Transmembrane Helix	41	66	0.89
Non-Cytoplasmic	67	79	0.73
Transmembrane Helix	80	101	0.89
Cytoplasmic	102	113	0.74
Transmembrane Helix	114	134	0.93
Non-Cytoplasmic	135	176	0.92
Transmembrane Helix	177	197	0.91
Cytoplasmic	198	209	0.89
Transmembrane Helix	210	231	0.88
Non-Cytoplasmic	232	247	0.86
Transmembrane Helix	248	268	0.81
Cytoplasmic	269	300	0.88