YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE36272
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.62
Transmembrane Helix	7	27	0.84
Non-Cytoplasmic	28	389	0.71
Transmembrane Helix	390	408	0.73
Cytoplasmic	409	415	0.42
Transmembrane Helix	416	431	0.45
Non-Cytoplasmic	432	442	0.78
Transmembrane Helix	443	462	0.90
Cytoplasmic	463	473	0.82
Transmembrane Helix	474	494	0.84
Non-Cytoplasmic	495	591	0.57
Transmembrane Helix	592	614	0.78
Cytoplasmic	615	633	0.80
Transmembrane Helix	634	653	0.94
Non-Cytoplasmic	654	663	0.65
Transmembrane Helix	664	681	0.91
Cytoplasmic	682	693	0.63
Transmembrane Helix	694	720	0.83
Non-Cytoplasmic	721	726	0.63
Transmembrane Helix	727	745	0.84
Cytoplasmic	746	755	0.50
Transmembrane Helix	756	790	0.65
Non-Cytoplasmic	791	806	0.71
Transmembrane Helix	807	829	0.75
Cytoplasmic	830	843	0.62
Transmembrane Helix	844	864	0.91
Non-Cytoplasmic	865	883	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSIIRILLV SINILLALFI FQNGFLLKRQ EILSKSSCSD AHAQPGQTCW MKQQYQRVIL  60
   61 ILVDALRYDF LIPIDENTKK SKEEWYYRGQ MKNIEKLVKS GNVSIGTLLA DPPTTTLQRL 120
  121 KALTTGTLPT FIDAGDNFSP DAVISEDSFV YQAAQLGKNV TLLGDDTWLS LFPNQFSKTA 180
  181 AYDSFDINDL NTVDDKIAPI LQDEMLNSNS SIIIAHFLGV DHCGHKFGPS HPVMADTLRK 240
  241 MDRIIGQTIE TMKSDDHGMT STGDHGGESE NEIRAGILVH SKKHQIILPE RPIHQIDIVP 300
  301 TISLLMGLPI PFSNLGTVIT QLFTRDLWEI AVGMNYEQVK RFAETYAAQK NFGELHSHTI 360
  361 RDSNTMEEQL DTMSRIQTLL RVSWTQFDDA YINAGIFSLV EAIMFLITNE VMSLEWIIYR 420
  421 TGCGLLQAAL LTDKTDSDGS ARTLLLMTLA VSCLSSIISM CHKALQIRIS IKSMLSAKVI 480
  481 GPILVIIHSI SLFSNSYVVY EAQVVRYFLQ SLVTLVFLEK LRSTALRPRK PFKLNFLWKF 540
  541 VNQDQNLIIF TLIMVGLRSE PIFHRCREEE VGCDTYYPSR QAGSLTRDAQ VVRLLFALGS 600
  601 LAVANLSVFK YYGLRDTKSQ IESNSKRSSE TIRILSATSW LHIAIIVLHS VFASLTHDVS 660
  661 RANLSAHSLS VISLICAVLA WREGNSAICA HFLLMPVYIL FGDGLIPAII IFIAVSVLIA 720
  721 EFVSREFIAS TIALLIPLGF YHLGHSPVIS SIPWNAAFVG IPGGTALRVL PALFVLFHLN 780
  781 FSAISSIFVI SSESESSQKM SAPNTAWTLT ETLVLMTIRA TLTCLVSSIH RRHLMVWKIF 840
  841 APKFIFECIL TIVFIFSANF FLIYRQFFGE KFKNSEAKIN KLH