YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE36975
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEGGYLALQ SVLALVLLVV TAVAGSAPLL LLTFLKKKGK DQNDSGWLSY LSCFSGGVFM  60
   61 ATCFLDVMPH VQQTYGEILE TYNVEFRLPM NQLFICVGFF FVYLIEEITA KVFGSGGHGH 120
  121 SHGPPIPLTV DIKKEKVTRV QLIENGSSSS PETLMIPIDS RTRHSLVVEE TAPWVVSDEK 180
  181 RNLLKSLTFA IAMSFHSLLE GFALGVQDSD AAIWTLFLSL LLHKSIEAFS VGLQISRANT 240
  241 EKKGIVMCTI LVYALMTPLG SVLGTLLQNT GDKSFGKDCT IVFLEAMAAG TFIYVTFLEI 300
  301 LAAEKENRFN SLKQLLCIGL GFMVILALQF FFGHEGHGHG HPDHGVPSPS ALPSPSFSFA 360
  361 PAV

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.86
Transmembrane Helix	12	35	0.90
Cytoplasmic	36	45	0.95
Transmembrane Helix	46	68	0.91
Non-Cytoplasmic	69	87	0.89
Transmembrane Helix	88	105	0.91
Cytoplasmic	106	182	0.96
Transmembrane Helix	183	204	0.81
Non-Cytoplasmic	205	210	0.76
Transmembrane Helix	211	233	0.80
Cytoplasmic	234	244	0.87
Transmembrane Helix	245	267	0.91
Non-Cytoplasmic	268	280	0.86
Transmembrane Helix	281	302	0.90
Cytoplasmic	303	311	0.90
Transmembrane Helix	312	333	0.90
Non-Cytoplasmic	334	363	0.96