YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srz-60
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSIVRNNTD SVEYFIIFNG SNLITGIIIL IYFLLFPFYV YVNKANRKRD QAVLIYPFTK  60
   61 HFFKMTVVMS ILYVIFIAGM LSGVLFLVRK SPYIAVSGLA IFFAIQALSL VTHVFNLLLS 120
  121 LLGIAKFILY FFPSQEKRVS SIQKSVYRRI WLLYVACSFE DAILYVWVLR ENEMNIIKIG 180
  181 LLVSQTICIL ISALLYIPIL ISVRKLANLA SALENNPQKY IFWQTMTVFI FKLLYIPAIA 240
  241 FALLVSTFPS LYLTTSVRCV DIFTTPLIIQ ISYLLCNKRN VNTLLTSFNL KTFLKVLFNQ 300
  301 KTNSAVRPLH QIQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.70
Transmembrane Helix	21	42	0.87
Cytoplasmic	43	61	0.73
Transmembrane Helix	62	87	0.85
Non-Cytoplasmic	88	101	0.62
Transmembrane Helix	102	130	0.79
Cytoplasmic	131	149	0.85
Transmembrane Helix	150	169	0.93
Non-Cytoplasmic	170	178	0.78
Transmembrane Helix	179	200	0.92
Cytoplasmic	201	220	0.86
Transmembrane Helix	221	245	0.80
Non-Cytoplasmic	246	313	0.61