YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ser-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDDFSQEMV LRAIDSIRDS VINASSAVST TTLPPLDIPM TSMKPPSIIP TVELVLGTIT  60
   61 YLVIIAMTVV GNTLVVVAVF SYRPLKKVQN YFLVSLAASD LAVAIFVMPL HVVTFLAGGK 120
  121 WLLGVTVCQF FTTADILLCT SSILNLCAIA LDRYWAIHNP INYAQKRTTK FVCIVIVISL 180
  181 QSNYGEGKRR RLPSFVMEM

Type	Start	End	Confidence
Cytoplasmic	1	20	0.62
Transmembrane Helix	21	38	0.58
Non-Cytoplasmic	39	57	0.82
Transmembrane Helix	58	80	0.91
Cytoplasmic	81	90	0.79
Transmembrane Helix	91	113	0.89
Non-Cytoplasmic	114	129	0.69
Transmembrane Helix	130	151	0.81
Cytoplasmic	152	199	0.73