YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37181
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIKRLLFLF SAISVVSCLS RHPKLLLISF DGFRYDLLDE VLTPNIHKWA SMSTWFTSGV  60
   61 KSQYVTYTAP NHMSIATGLF EEEHGIVGNY FFDADTKKAF DYFNSTGKEG VVNASQESFW 120
  121 YNSDPIWLTN ERWESSRRSA AFYWPNGESQ FPYIPHKPKI ARPWTIVGDL KSWMKDADDV 180
  181 IDAFIREKEP VNFLAWYVAE PDHTLHGNGF HNKEIEKTLK KLDDLFLYFI KKFDDNNLGA 240
  241 DVNIILTADH GHAEIKDHKH VMCVKDYVSG AGFEMGDHMI YPHSDEIGKQ IYANLTSAVK 300
  301 EHGYDVNIHW REEVPERWHY RNSSRIGKIV FEPQIGSSIS FSCTKDLMEK QYGENGTLKF 360
  361 NSSTHGQDPD RPEMRAFLIM RGPAFSENYT IADIPSNVDL YNIMCHVLGI TPTENNGTME 420
  421 IVKRALKENR YLPMTHGFVF NQITDSWSFS LILIPSMCIV IIFFAYGCKN TVLKSDPNWG 480
  481 RSDTVQGYRP LSNRTNEGFE LNDDEDEDEG DGLRNSIDLE RGGRRSQAGG GALGSLNNGT 540
  541 VAMSGLLDEM SDDDI

Type	Start	End	Confidence
Signal Peptide	1	20	0.97
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	446	0.99
Transmembrane Helix	447	468	0.83
Cytoplasmic	469	555	0.88