YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srz-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKTLRLQDL PNAYLVIGGI GAVLLIIYLI SIIVIFPLYV YVYRLNRKTE KLAYFYPITK  60
   61 HFYSVICSMQ FYIYVTLSIG AITWLFFDLT AAGCVFIVSL FFAYFVAITV TSVQNVLLFI 120
  121 LALRLFMILF FPNFKKVISI NQKSFQATRN LLYIVYSLIQ IISKLVKIFC GTESAAYGRI 180
  181 YVAGDILVMF AAIMYVIMFM KIRRWSKMTG DQLNNPEKYI FYQTVLIVVT KLLAINVILV 240
  241 MCYQDGYSDD WAFGAFVVSD VLTTPFVIQG SYLLCNRTNV DTVLSIQFKT MKTWKMIICG 300
  301 LGSVAEGRQR RREFKMRIYA AKKKAKDLIR GSGKDGTISK PGAYIIPVAQ TP

Type	Start	End	Confidence
Cytoplasmic	1	12	0.64
Transmembrane Helix	13	36	0.88
Non-Cytoplasmic	37	60	0.57
Transmembrane Helix	61	82	0.74
Cytoplasmic	83	83	0.46
Transmembrane Helix	84	108	0.78
Non-Cytoplasmic	109	115	0.51
Transmembrane Helix	116	134	0.86
Cytoplasmic	135	149	0.79
Transmembrane Helix	150	170	0.80
Non-Cytoplasmic	171	179	0.76
Transmembrane Helix	180	199	0.96
Cytoplasmic	200	218	0.95
Transmembrane Helix	219	242	0.84
Non-Cytoplasmic	243	250	0.81
Transmembrane Helix	251	273	0.69
Cytoplasmic	274	352	0.85