YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	psd-1
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMPLFNVLRS ARMLPAVSKK VVSPPMMLRS VRELTNQSKN VYATKEVIIG ASQKKKRSWV  60
   61 KWLSVSTLII GGASYVGYLF TPDWREIVDS KHYYSNWKIR VYLSLPFNTA SRVIGGLANQ 120
  121 EIPVWLREHL LGGFARMYDC RMDDCVDPDF KNYPSFAAFF NRKLKESTRP ISASPLVSPA 180
  181 DGTVLHFGKV EDNKIEYVKG HDYDVDKFLG DVDLPQKDEL DLYQVVIYLA PGDYHAFHSP 240
  241 ARWVANQCRH VPGLLLSVRP TLLSHVPHLF CLNERVVLNG SWRHGFFSMS AVAATNVGDI 300
  301 VVDAEPSLRT NIVRRKTQKI MNTETEIHAP YVSGERVGEF RLGSTIVLVF QAPPTIKFAI 360
  361 KAGDPLRYGQ SLVADGV

Type	Start	End	Confidence
Cytoplasmic	1	58	0.91
Transmembrane Helix	59	80	0.84
Non-Cytoplasmic	81	377	0.96