YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLETRCRLH LWPSGKLLRR IAPQAIIVLI LTTLMLVGAA IFQSIDPVLG EQSFYEVVFF  60
   61 EFITISTIGY GNQYPQTHAS RVFSIFFSIL GIPLLVVTLG NFGKYLTKFY WKTHGWIFSE 120
  121 RTESELVNDK DMPGIVIACL YLLTFAIGFF FIPHSGAAYS IDDCYFSFIS FATVGFGDKV 180
  181 PQIDTFEKFC KVITYLVWGT ILNIMLISYV TNWFTQLFAR QPFRGTDVEV MIGGQCITVS 240
  241 EITSLVAKEF HASPHQVRSI LHDINGIMED MKTEEDSEKS DILVAQDL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	42	0.96
Non-Cytoplasmic	43	81	0.67
Transmembrane Helix	82	103	0.91
Cytoplasmic	104	133	0.57
Transmembrane Helix	134	154	0.89
Non-Cytoplasmic	155	163	0.42
Transmembrane Helix	164	180	0.45
Cytoplasmic	181	191	0.52
Transmembrane Helix	192	214	0.87
Non-Cytoplasmic	215	288	0.54