YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SKG1
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTASTSVAVG CAVGIPVGVG IIIAVCFWFN LQKRYKREEQ DDRELERAIY DESGFVSFDN  60
   61 FGPLRDSKDE AALASSELKN PDHTSGSSEG SAHPEEKDGK SRDQEKPLGK KNSKYYVPAY 120
  121 RRKINLLQVR NNNYGNNARQ KSVVDLPSIN NSSNVSLSSS QRHITKRQIS VYDQMVPVIS 180
  181 DEGPNFFADP SSDTNTSNDQ NKASMIELKH NTRQSSNENL IRNLQNQDFG SYYPRRASSS 240
  241 FLNGNISNAS FHTRNSSITS VNKRDALEDV FATPKSAAQS QLPNTFDKDN EGMDADHSVK 300
  301 DSRSAITDKD KDLYKLQNNY DVGNIGEIAE EDQYENEFTN YSQSKREFIE SLRPK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.49
Transmembrane Helix	7	31	0.87
Non-Cytoplasmic	32	355	0.54