YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CPT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.77
Transmembrane Helix	10	31	0.44
Non-Cytoplasmic	32	51	0.46
Transmembrane Helix	52	72	0.59
Cytoplasmic	73	161	0.84
Transmembrane Helix	162	185	0.88
Non-Cytoplasmic	186	258	0.82
Transmembrane Helix	259	281	0.87
Cytoplasmic	282	293	0.79
Transmembrane Helix	294	314	0.86
Non-Cytoplasmic	315	338	0.85
Transmembrane Helix	339	362	0.89
Cytoplasmic	363	382	0.92
Transmembrane Helix	383	405	0.84
Non-Cytoplasmic	406	409	0.76
Transmembrane Helix	410	432	0.90
Cytoplasmic	433	440	0.82
Transmembrane Helix	441	462	0.90
Non-Cytoplasmic	463	469	0.75
Transmembrane Helix	470	490	0.88
Cytoplasmic	491	514	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFFIPQSSF CQ*FLSVP*Q VWVTHI*PFF HNLRYCAAFT *AHGKSITPT NFI*LNSAVL  60
   61 LKVLLFCVFL SLQSEFTDLK PSGTLK*RNS PGKILCLMLK PFI*CMHFAQ EH*YLILSQL 120
  121 IQTS*GITNP NRPNLQLQYQ SDDRSFLSNH VLRPFWRKFA TIFPLWMAPN LVTLLGFCFI 180
  181 IFNVLTTLYY DPYFDQESPR WTYFSYAIGL FLYQTFDACD GMHARRTGQQ GPLGELFDHC 240
  241 IDSINTTLSM IPVCSMTGMG YTYMTIFSQF AILCSFYLST WEEYHTHKLY LAEFCGPVEG 300
  301 IIVLCISFIA VGIYGPQTIW HTKVAQFSWQ DFVFDVETVH LMYAFCTGAL IFNIVTAHTN 360
  361 VVRYYESQST KSATPSKTAE NISKAVNGLL PFFAYFSSIF TLVLIQPSFI SLALILSIGF 420
  421 SVAFVVGRMI IAHLTMQPFP MVNFPFLIPT IQLVLYAFMV YVLDYQKGSI VSALVWMGLG 480
  481 LTLAIHGMFI NDIIYDITTF LDIYALSIKH PKEI