YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HMX1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDSSNTIIP SPTDVGALAN RINFQTRDAH NKINTFMGIK MAIAMRHGFI YRQGILAYYY  60
   61 VFDAIEQEID RLLNDPVTEE ELQTSTILKQ FWLEDFRRST QIYKDLKLLY SNTFKSTESL 120
  121 NEFLATFQKP PLLQQFINNI HENIHKEPCT ILSYCHVLYL ALFAGGKLIR SNLYRRLGLF 180
  181 PNFEKLSQKE LVKKGTNFFT FSDLGPTEET RLKWEYKKNY ELATRTELTE AQKLQIISVA 240
  241 EGIFDWNFNI VAEIGELNRR ELMGKFSFKC ITYLYEEWMF NKDSATRRAL HTVMLLVLSI 300
  301 IAIWVLYFLV KSFLSIV

Type	Start	End	Confidence
Cytoplasmic	1	288	0.71
Transmembrane Helix	289	310	0.92
Non-Cytoplasmic	311	317	0.72