YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIP4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYGREDTTI EPDFIEPDAP LAASGGVADN IGGTMQNSGS RGTLDETVLQ TLKRDVVEIN  60
   61 SRLKQVVYPH FPSFFSPSDD GIGAADNDIS ANCDLWAPLA FIILYSLFVS HARSLFSSLF 120
  121 VSSWFILLVM ALHLRLTKPH QRVSLISYIS ISGYCLFPQV LNALVSQILL PLAYHIGKQN 180
  181 RWIVRVLSLV KLVVMALCLM WSVAAVSWVT KSKTIIEIYP LALCLFGMAW LSTIL

Type	Start	End	Confidence
Cytoplasmic	1	114	0.74
Transmembrane Helix	115	136	0.87
Non-Cytoplasmic	137	144	0.42
Transmembrane Helix	145	174	0.68
Cytoplasmic	175	182	0.45
Transmembrane Helix	183	208	0.82
Non-Cytoplasmic	209	214	0.43
Transmembrane Helix	215	234	0.92
Cytoplasmic	235	235	0.52