YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RER1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQYNCFAGL LNLSSGKPYL NEVKNCGFFV RRGKKNLSKH ASAVEHELYI RKITIQERRF  60
   61 RFGTKCYTKG IEYQKKEVKM DYDSSDTMNG GSSNPLITKM NTMKLLYQHY LDKVTPHAKE 120
  121 RWAVLGGLLC LFMVRITMAE GWYVICYGLG LFLLNQFLAF LTPKFDMSLQ QDEENNELEA 180
  181 GEKSEEFLSI HQKTYQSSNS GITAFRATVI SLLLSVFSIF SIPVIFAHSL FDCYFHYYCF 240
  241 F

Type	Start	End	Confidence
Cytoplasmic	1	121	0.93
Transmembrane Helix	122	139	0.62
Non-Cytoplasmic	140	142	0.49
Transmembrane Helix	143	162	0.80
Cytoplasmic	163	206	0.60
Transmembrane Helix	207	231	0.83
Non-Cytoplasmic	232	241	0.62