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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AB40G_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI  60
   61 LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK LLWKLKKRID RVGIDLPTIE 120
  121 VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG 180
  181 RMALLLGPPS SGKTTLLLAL AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI 240
  241 GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM 300
  301 TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST 360
  361 TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI AEGEIIYEGP RDHVVEFFET 420
  421 MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL 480
  481 ALPFDKTKSH PAALTTKKYG VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM 540
  541 TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW 600
  601 VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA 660
  661 ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG YWISPIMYGQ NAILANEFFG 720
  721 HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG 780
  781 KPQAVIAEEP ASDETELQSA RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM 840
  841 IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG 900
  901 YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE 960
  961 LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM DEPTSGLDAR AAAIVMRTVR1020
 1021 NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN1080
 1081 KITEGYNPAT WMLEVSTTSQ EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF1140
 1141 PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD1200
 1201 LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV1260
 1261 LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF YGMMAVAMTP NHHIASVVSS1320
 1321 AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ1380
 1381 FIREFYGYRE GFLGVVAAMN VIFPLLFAVI FAIGIKSFNF QKR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle