YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AB36G_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	540	0.79
Transmembrane Helix	541	561	0.92
Cytoplasmic	562	572	0.69
Transmembrane Helix	573	596	0.85
Non-Cytoplasmic	597	620	0.70
Transmembrane Helix	621	646	0.76
Cytoplasmic	647	654	0.70
Transmembrane Helix	655	677	0.85
Non-Cytoplasmic	678	683	0.61
Transmembrane Helix	684	705	0.93
Cytoplasmic	706	713	0.65
Transmembrane Helix	714	737	0.80
Non-Cytoplasmic	738	769	0.77
Transmembrane Helix	770	794	0.89
Cytoplasmic	795	1211	0.91
Transmembrane Helix	1212	1234	0.90
Non-Cytoplasmic	1235	1242	0.77
Transmembrane Helix	1243	1264	0.84
Cytoplasmic	1265	1325	0.71
Transmembrane Helix	1326	1344	0.95
Non-Cytoplasmic	1345	1355	0.80
Transmembrane Helix	1356	1376	0.94
Cytoplasmic	1377	1384	0.89
Transmembrane Helix	1385	1403	0.95
Non-Cytoplasmic	1404	1441	0.91
Transmembrane Helix	1442	1461	0.96
Cytoplasmic	1462	1469	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYNPNLPPL GGGGVSMRRS ISRSVSRASR NIEDIFSSGS RRTQSVNDDE EALKWAAIEK  60
   61 LPTYSRLRTT LMNAVVEDDV YGNQLMSKEV DVTKLDGEDR QKFIDMVFKV AEQDNERILT 120
  121 KLRNRIDRVG IKLPTVEVRY EHLTIKADCY TGNRSLPTLL NVVRNMGESA LGMIGIQFAK 180
  181 KAQLTILKDI SGVIKPGRMT LLLGPPSSGK TTLLLALAGK LDKSLQVSGD ITYNGYQLDE 240
  241 FVPRKTSAYI SQNDLHVGIM TVKETLDFSA RCQGVGTRYD LLNELARREK DAGIFPEADV 300
  301 DLFMKASAAQ GVKNSLVTDY TLKILGLDIC KDTIVGDDMM RGISGGQKKR VTTGEMIVGP 360
  361 TKTLFMDEIS TGLDSSTTFQ IVKCLQQIVH LNEATVLMSL LQPAPETFDL FDDIILVSEG 420
  421 QIVYQGPRDN ILEFFESFGF KCPERKGTAD FLQEVTSKKD QEQYWVNPNR PYHYIPVSEF 480
  481 ASRYKSFHVG TKMSNELAVP FDKSRGHKAA LVFDKYSVSK RELLKSCWDK EWLLMQRNAF 540
  541 FYVFKTVQIV IIAAITSTLF LRTEMNTRNE GDANLYIGAL LFGMIINMFN GFAEMAMMVS 600
  601 RLPVFYKQRD LLFYPSWTFS LPTFLLGIPS SILESTAWMV VTYYSIGFAP DASRFFKQFL 660
  661 LVFLIQQMAA SLFRLIASVC RTMMIANTGG ALTLLLVFLL GGFLLPKGKI PDWWGWAYWV 720
  721 SPLTYAFNGL VVNEMFAPRW MNKMASSNST IKLGTMVLNT WDVYHQKNWY WISVGALLCF 780
  781 TALFNILFTL ALTYLNPLGK KAGLLPEEEN EDADQGKDPM RRSLSTADGN RRGEVAMGRM 840
  841 SRDSAAEASG GAGNKKGMVL PFTPLAMSFD DVKYFVDMPG EMRDQGVTET RLQLLKGVTG 900
  901 AFRPGVLTAL MGVSGAGKTT LMDVLAGRKT GGYIEGDVRI SGFPKVQETF ARISGYCEQT 960
  961 DIHSPQVTVR ESLIFSAFLR LPKEVGKDEK MMFVDQVMEL VELDSLRDSI VGLPGVTGLS1020
 1021 TEQRKRLTIA VELVANPSII FMDEPTSGLD ARAAAIVMRA VRNTVDTGRT VVCTIHQPSI1080
 1081 DIFEAFDELM LMKRGGQVIY AGPLGQNSHK VVEYFESFPG VSKIPEKYNP ATWMLEASSL1140
 1141 AAELKLSVDF AELYNQSALH QRNKALVKEL SVPPAGASDL YFATQFSQNT WGQFKSCLWK1200
 1201 QWWTYWRSPD YNLVRFIFTL ATSLLIGTVF WQIGGNRSNA GDLTMVIGAL YAAIIFVGIN1260
 1261 NCSTVQPMVA VERTVFYRER AAGMYSAMPY AISQVTCELP YVLIQTVYYS LIVYAMVGFE1320
 1321 WKAEKFFWFV FVSYFSFLYW TYYGMMTVSL TPNQQVASIF ASAFYGIFNL FSGFFIPRPK1380
 1381 IPKWWIWYYW ICPVAWTVYG LIVSQYGDVE TRIQVLGGAP DLTVKQYIED HYGFQSDFMG1440
 1441 PVAAVLIAFT VFFAFIFAFC IRTLNFQTR