YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MPCP1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRVKSKLDE ELSSPWFYTV CTMGGMLSAG TTHLAITPLD VLKVNMQVNP VKYNSIPSGF  60
   61 STLLREHGHS YLWRGWSGKL LGYGVQGGCR FGLYEYFKTL YSDVLPNHNR TSIYFLSSAS 120
  121 AQIFADMALC PFEAIKVRVQ TQPMFAKGLL DGFPRVYRSE GLAGFHRGLF PLWCRNLPFS 180
  181 MVMFSTFEQS VEFIYQKIIQ KRKQDCSKAQ QLGVTCLAGY TAGAVGTIIS NPADVVLSSL 240
  241 YNNKAKNVLQ AVRNIGFVGL FTRSLPVRIT IVGPVITLQW FFYDAIKVLS GFPTSGGVKK 300
  301 PVDAAKLSV

Type	Start	End	Confidence
Cytoplasmic	1	15	0.78
Transmembrane Helix	16	36	0.81
Non-Cytoplasmic	37	309	0.70