YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4895217, gi\|2...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.51
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRFYHWRFP PSLAVVRMLS SPPPPHSHSP FSGGGVNSNS VGGNSKPELQ FPQSQPHKLS  60
   61 SSPSSSLKST VACSNAGAIR RSMATVSQAF SERTESIDSD LGSLVVVSFY KFADFPEHAD 120
  121 FRKPLKDLCE KLRVSGGIIL APEGINGSIC GIRESVEEVL AFIQRDVRLN GLRQVETPIV 180
  181 TLGIPSVSPI ERVGTYVSPE EWNELISDPE TVVIDVRNTY ETRIGKFKGA VDPCTTAFRN 240
  241 FPSWVENQFA LKQEGNETQA KVEKEDFSEI THKEDKAEKP KTLPRIAMYC TGGIRCEKAS 300
  301 SLLLSQGFEE VLKRSKHFCY QVYHLKGGIL KYLEEVPKTE SLWEGECFVF DKRVSVEHGL 360
  361 AQGTHKLCYG CKQPISDEDM EAPEYEYGVS CPYCYSKKSE EEKERARARQ TQFEEWGVIG 420
  421 GPDKGRRPAT KPDSPRKKIN AKLGSLWGLI EFHSEGESER EIEAVMAGTS GLLNAVKPKI 480
  481 QTIDIQAAAG WGIAAAAGAI WVVQPFGWIK KTFIDPPPTE EK

Type	Start	End	Confidence
Signal Peptide	1	27	0.68
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	486	0.98
Transmembrane Helix	487	508	0.68
Cytoplasmic	509	522	0.70