YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4895179, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	100	0.98
Transmembrane Helix	101	123	0.87
Non-Cytoplasmic	124	136	0.81
Transmembrane Helix	137	159	0.84
Cytoplasmic	160	166	0.84
Transmembrane Helix	167	187	0.92
Non-Cytoplasmic	188	194	0.70
Transmembrane Helix	195	216	0.84
Cytoplasmic	217	226	0.73
Transmembrane Helix	227	250	0.77
Non-Cytoplasmic	251	252	0.51
Transmembrane Helix	253	273	0.81
Cytoplasmic	274	320	0.69
Transmembrane Helix	321	344	0.78
Non-Cytoplasmic	345	358	0.65
Transmembrane Helix	359	385	0.74
Cytoplasmic	386	406	0.55
Transmembrane Helix	407	441	0.69
Non-Cytoplasmic	442	459	0.78
Transmembrane Helix	460	479	0.85
Cytoplasmic	480	561	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVGSLKPL HHSSCSSSFP RNPIVNRKAL LGFVFDSARK NQIRCENLRY SSESDGKRRN  60
   61 AAAKKRNQSP ERCAAEGVLT GGGGSEAIAE VRTMMPERIK VVILTACMMC LCNADRVVMS 120
  121 VAVVPLADKL GWSSSFLGVV QSSFLWGYIF SSVIGGALVD RYGGKRVLAW GVALWSLATL 180
  181 LTPWAAAHST LALLCVRAFF GLAEGVAMPS MTTLLSRWFP MDERASAVGI SMAGFHMGNV 240
  241 VGLLLTPLML SSIGISGPFI LFASLGLLWV STWSSGVTNN PQDSPFITRS ELRLIQAGKP 300
  301 VQPSTISPKP NPSLRLLLSK LPTWAIIFAN VTNNWGYFVL LSWMPVYFQT VFNVNLKQAA 360
  361 WFSALPWATM AISGYYAGAA SDFLIRTGHS VTSVRKIMQS IGFMGPGLSL LCLNFAKSPS 420
  421 CAAVFMTIAL SLSSFSQAGF LLNMQDIAPQ YAGFLHGNNV IRWWIFSSSS FASILFLAEK 480
  481 VRVCISGVRD RYFELCGYVG CDRKYNRDGI FCAVARLFSG VLDGYGLSLL CNHRVLAPLC 540
  541 NRRTSLLDPK RSPWTLYCLE L