YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IPCS2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLYIRRESS KLWKRFCSEI STEIGLLAEN WKYLLAGLIC QYIHGLAAKG VHYIHRPGPT  60
   61 LQDLGFFLLP ELGQERSYIS ETVFTSVFLS FFLWTFHPFI LKTKKIYTVL IWCRVLAFLV 120
  121 ACQFLRVITF YSTQLPGPNY HCREGSKVSR LPWPKSALEV LEINPHGVMY GCGDLIFSSH 180
  181 MIFTLVFVRT YQKYGTKRFI KLFGWLTAIV QSLLIIASRK HYSVDVVVAW YTVNLVVFCL 240
  241 DKKLPELPDR TAVLLPVISK DRTKEENHKL LNGNGVDPAD WRPRAQVNGK IDSNGVHTDN 300
  301 TMNGA

Type	Start	End	Confidence
Cytoplasmic	1	30	0.69
Transmembrane Helix	31	48	0.58
Non-Cytoplasmic	49	77	0.84
Transmembrane Helix	78	100	0.84
Cytoplasmic	101	109	0.83
Transmembrane Helix	110	130	0.94
Non-Cytoplasmic	131	166	0.97
Transmembrane Helix	167	188	0.88
Cytoplasmic	189	198	0.82
Transmembrane Helix	199	218	0.75
Non-Cytoplasmic	219	305	0.51