YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PROT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.86
Transmembrane Helix	33	52	0.85
Non-Cytoplasmic	53	59	0.64
Transmembrane Helix	60	84	0.86
Cytoplasmic	85	117	0.78
Transmembrane Helix	118	140	0.87
Non-Cytoplasmic	141	150	0.69
Transmembrane Helix	151	169	0.95
Cytoplasmic	170	175	0.61
Transmembrane Helix	176	198	0.90
Non-Cytoplasmic	199	218	0.75
Transmembrane Helix	219	238	0.83
Cytoplasmic	239	256	0.88
Transmembrane Helix	257	279	0.93
Non-Cytoplasmic	280	298	0.81
Transmembrane Helix	299	318	0.88
Cytoplasmic	319	343	0.82
Transmembrane Helix	344	364	0.85
Non-Cytoplasmic	365	369	0.72
Transmembrane Helix	370	390	0.89
Cytoplasmic	391	402	0.83
Transmembrane Helix	403	426	0.90
Non-Cytoplasmic	427	439	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTSEARNRK VVAVEQFDLE VPETAHQISS DSWFQVAFVL TTGINSAYVL GYSGTVMVPL  60
   61 GWIGGVVGLI LATAISLYAN TLIAKLHEFG GKRHIRYRDL AGFIYGKKMY RVTWGLQYVN 120
  121 LFMINCGFII LAGSALKAVY VLFRDDSLMK LPHFIAIAGV VCAIFAIGIP HLSALGIWLG 180
  181 VSTILSIIYI IVAIVLSAKD GVNKPERDYN IQGSSINKLF TITGAAANLV FAFNTGMLPE 240
  241 IQATVKQPVV KNMMKALYFQ FTVGVLPMYA VTFIGYWAYG SSTSTYLLNS VSGPVWVKAL 300
  301 ANISAFLQSV ISLHIFASPT YEYMDTKYGV KGSPLAMKNL LFRTVARGSY IAVSTLLSAL 360
  361 LPFLGDFMSL TGAISTFPLT FILANHMYLV AMNDELSLVQ KLWHWLNVCF FGLMSLAAAI 420
  421 AAVRLISVDS KNFHVFADV